The Microbial World

Site: Young Education
Cours: Microbiology and Disease
Livre: The Microbial World
Imprimé par: Visiteur anonyme
Date: lundi 5 octobre 2026, 05:00

1. What Are Microorganisms?

Learning outcomes
  • I can define microorganisms and explain why they are important.
  • I can distinguish microorganisms from larger organisms.
  • I can identify the major groups of microorganisms.
  • I can describe environments where microorganisms live.
  • I can explain the role of microorganisms in ecosystems and human life.

 

2. Bacteria

Learning outcomes
  • I can describe the basic structure of bacterial cells.
  • I can distinguish bacteria from other microorganisms.
  • I can explain how bacteria reproduce.
  • I can identify beneficial and harmful bacteria.
  • I can explain the importance of bacteria in nature and industry.

Introduction

Bacteria are among the oldest and most successful living organisms on Earth. They have existed for more than 3.5 billion years, long before plants, animals, or humans appeared. Today, bacteria are found almost everywhere—from deep oceans and hot springs to the soil beneath our feet and inside the human body.

Although bacteria are often associated with disease, only a small percentage cause illness. In fact, most bacteria are harmless or beneficial. They recycle nutrients, help digest food, produce medicines, and are used in industries that make foods such as yoghurt and cheese. Understanding bacteria helps us appreciate both their importance and their impact on our lives.


What Are Bacteria?

Bacteria are single-celled microorganisms that belong to a group of organisms called prokaryotes.

Unlike plant and animal cells, bacterial cells:

  • Do not have a nucleus.
  • Do not contain membrane-bound organelles such as mitochondria or chloroplasts.
  • Have DNA that floats freely in the cytoplasm.

Despite their simple structure, bacteria can perform all the processes needed for life.


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Figure 1. Bacteria are simple single-celled organisms known as prokaryotes.


The Structure of a Bacterial Cell

A typical bacterial cell contains several important parts.

Cell Wall

  • Provides support and protection.
  • Maintains the cell's shape.

Cell Membrane

  • Controls the movement of substances into and out of the cell.

Cytoplasm

  • A jelly-like substance where many chemical reactions take place.

DNA

  • A single circular chromosome.
  • Not enclosed within a nucleus.
  • Contains the bacterium's genetic information.

Ribosomes

  • Small structures where proteins are made.

Plasmids

Some bacteria contain small circular pieces of DNA called plasmids.

Plasmids often carry genes that provide useful traits, such as antibiotic resistance.


Flagellum (Some Species)

Some bacteria have one or more flagella.

These long, whip-like structures help the bacterium move.


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Figure 2. The main structures of a bacterial cell include the cell wall, membrane, cytoplasm, DNA, ribosomes, and sometimes plasmids and flagella.


How Are Bacteria Different from Other Microorganisms?

Bacteria differ from other groups of microorganisms in several ways.

Bacteria Other Microorganisms
Single-celled May be single-celled or multicellular
No nucleus Fungi, protozoa, and algae have nuclei
Prokaryotic cells Most other microorganisms are eukaryotic
Reproduce by binary fission.   Many reproduce sexually or by spores

These differences help scientists classify living organisms.


How Do Bacteria Reproduce?

Bacteria reproduce by a process called binary fission.

During binary fission:

  1. The bacterial DNA is copied.
  2. The cell grows larger.
  3. The cell membrane and wall divide.
  4. Two genetically identical daughter cells are produced.

Binary fission is a form of asexual reproduction because only one parent cell is involved.

Under favourable conditions, some bacteria can divide every 20 minutes, allowing populations to grow very rapidly.


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Figure 3. During binary fission, one bacterial cell divides to produce two genetically identical cells.


Beneficial Bacteria

Most bacteria are beneficial.

Examples include:

In the Human Body

Beneficial bacteria in the digestive system help:

  • Digest food.
  • Produce vitamins such as vitamin K.
  • Prevent harmful bacteria from growing.
  • Support the immune system.

In Nature

Bacteria:

  • Decompose dead organisms.
  • Recycle nutrients.
  • Improve soil fertility.
  • Fix nitrogen in the roots of certain plants.

In Industry

Bacteria are used to produce:

  • Yoghurt.
  • Cheese.
  • Vinegar.
  • Medicines.
  • Enzymes.
  • Biofuels.

Figure 4. Beneficial bacteria support human health, agriculture, food production, and ecosystems.


Harmful Bacteria

A small number of bacteria cause disease.

Examples include:

  • Tuberculosis.
  • Cholera.
  • Salmonella food poisoning.
  • Tetanus.
  • Strep throat.

These bacteria may produce toxins or damage body tissues.

Fortunately, many bacterial infections can be treated with antibiotics, although antibiotic resistance is becoming an increasing concern.


The Importance of Bacteria in Ecosystems

Bacteria play several essential ecological roles.

Decomposition

They break down dead plants and animals.

This:

  • Recycles nutrients.
  • Returns minerals to the soil.
  • Supports plant growth.

Nitrogen Cycle

Some bacteria convert nitrogen gas into forms plants can use.

This process is called nitrogen fixation.

Without these bacteria, plants would struggle to obtain enough nitrogen to grow.


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Figure 5. Bacteria recycle nutrients and play a vital role in the nitrogen cycle.


Bacteria in Modern Industry

Scientists use bacteria to manufacture many useful products.

Examples include:

  • Insulin for diabetes treatment.
  • Vaccines.
  • Industrial enzymes.
  • Bioplastics.
  • Wastewater treatment.
  • Bioremediation (cleaning polluted environments).

Genetically modified bacteria are now used in many areas of biotechnology.


Why Bacteria Matter

Although bacteria are microscopic, they have enormous effects on the world.

They help:

  • Maintain ecosystems.
  • Produce food.
  • Support human health.
  • Manufacture medicines.
  • Recycle nutrients.
  • Drive many important biological processes.

Life on Earth could not function without bacteria.


Worked Example

Question

State whether each statement is True or False.

  1. Bacteria have a nucleus.
  2. Bacteria reproduce by binary fission.
  3. All bacteria cause disease.
  4. Some bacteria help make yoghurt.

Solution

  1. False
  2. True
  3. False
  4. True

Real-World Connection

People eat foods containing probiotic bacteria, such as yoghurt and some fermented drinks, to help maintain a healthy balance of microorganisms in their digestive system. These beneficial bacteria can support digestion and may help restore the gut microbiome after treatment with antibiotics.


Did You Know?

Scientists estimate that the human body contains trillions of bacteria, especially in the digestive system. In fact, bacterial cells living in and on your body have a combined mass of about 0.2 kilograms. Most of these bacteria are harmless or beneficial and are essential for maintaining good health.


Key Terms

Bacteria – Single-celled prokaryotic microorganisms that lack a nucleus.

Binary fission – A form of asexual reproduction in which one bacterial cell divides into two genetically identical cells.

Cell wall – A rigid outer layer that supports and protects bacterial cells.

Flagellum – A whip-like structure that helps some bacteria move.

Plasmid – A small circular piece of DNA found in many bacterial cells.

Prokaryote – An organism whose cells do not contain a nucleus or other membrane-bound organelles.

Ribosome – A structure where proteins are made.


Key Takeaways

  • Bacteria are single-celled prokaryotes that do not have a nucleus or membrane-bound organelles.
  • A bacterial cell contains a cell wall, cell membrane, cytoplasm, DNA, ribosomes, and sometimes plasmids and flagella.
  • Bacteria reproduce by binary fission, producing two genetically identical daughter cells.
  • Most bacteria are beneficial, helping with digestion, nutrient cycling, food production, and medicine, while only a small number cause disease.
  • Bacteria are essential in ecosystems because they decompose organic matter and recycle nutrients.
  • Modern industries use bacteria to produce foods, medicines, industrial enzymes, and environmentally friendly technologies.
 
 
 

3. Viruses

Learning outcomes
  • I can describe the structure of a virus.
  • I can explain how viruses reproduce inside host cells.
  • I can distinguish viruses from living cells.
  • I can identify examples of viral diseases.
  • I can explain why viruses are difficult to treat.

 

4. Fungi and Protists

Learning outcomes
  • I can describe the characteristics of fungi.
  • I can describe the characteristics of protists.
  • I can compare fungi, protists, bacteria, and viruses.
  • I can identify examples of beneficial and harmful fungi and protists.
  • I can explain the ecological roles of fungi and protists.

Introduction

When people think of microorganisms, they often think of bacteria or viruses. However, many other microscopic organisms are equally important. Fungi and protists play essential roles in ecosystems by recycling nutrients, producing oxygen, supporting food webs, and, in some cases, causing disease.

Although some fungi grow into large mushrooms that we can easily see, many fungi and most protists are microscopic. Together, they help maintain healthy ecosystems and are widely used in medicine, food production, agriculture, and scientific research.


What Are Fungi?

Fungi are organisms that obtain nutrients by absorbing them from other organisms or organic matter.

Unlike plants, fungi:

  • Do not carry out photosynthesis.
  • Cannot make their own food.
  • Feed by breaking down organic materials.

Fungi may be:

  • Single-celled (such as yeast).
  • Multicellular (such as moulds and mushrooms).

Fungal cells have:

  • A nucleus.
  • A cell wall made of chitin.
  • Membrane-bound organelles.

This means fungi are eukaryotes.


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Figure 1. Fungi include microscopic yeasts and moulds as well as larger mushrooms.


Characteristics of Fungi

Fungi:

  • Are eukaryotic organisms.
  • Have cell walls made of chitin.
  • Absorb nutrients from their surroundings.
  • Usually reproduce using spores.
  • Can live on dead or living organisms.

Many fungi grow as thread-like structures called hyphae, which form a network known as a mycelium.


What Are Protists?

Protists are a diverse group of mostly single-celled eukaryotic organisms.

Protists are very varied.

Some:

  • Carry out photosynthesis like plants.
  • Move like animals.
  • Absorb nutrients like fungi.

Because they are so diverse, protists do not fit neatly into the plant, animal, or fungal kingdoms.

Most protists live in:

  • Freshwater.
  • Oceans.
  • Damp soil.
  • Moist environments.

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Figure 2. Protists include many different microscopic organisms, such as amoebas, paramecia, and euglenas.


Characteristics of Protists

Protists:

  • Are eukaryotic.
  • Usually consist of a single cell.
  • Often live in water.
  • May move using:
    • Cilia.
    • Flagella.
    • Pseudopodia ("false feet").
  • May obtain food by:
    • Photosynthesis.
    • Eating other organisms.
    • Absorbing nutrients.

Protists show a wide variety of lifestyles.


Comparing Fungi, Protists, Bacteria, and Viruses

Feature Fungi Protists Bacteria Viruses
Living organism Yes Yes Yes Generally not considered living
Cell type Eukaryotic Eukaryotic Prokaryotic.   Not cellular
Nucleus Yes Yes No No
Usually single-celled Some Most Yes Not cells
Reproduce independently.   Yes Yes Yes No
Examples Yeast, mould.      Amoeba, Paramecium.   E. coli Influenza virus

Each group has unique characteristics that help scientists classify microorganisms.


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Figure 3. Fungi, protists, bacteria, and viruses differ in cell structure, reproduction, and how they obtain nutrients.


Beneficial Fungi

Many fungi are extremely useful.

Examples include:

Food Production

Yeast is used to make:

  • Bread.
  • Beer.
  • Wine.

Medicine

Some fungi produce antibiotics.

One famous example is:

  • Penicillium, which produces penicillin.

Decomposition

Fungi break down:

  • Dead plants.
  • Dead animals.
  • Fallen leaves.

This recycles nutrients back into ecosystems.


Harmful Fungi

Some fungi cause disease.

Examples include:

  • Athlete's foot.
  • Ringworm.
  • Crop diseases.
  • Food spoilage.

Although some fungi are harmful, most play beneficial roles in nature.


Beneficial Protists

Some protists are important producers.

Examples include:

Microscopic Algae

They:

  • Carry out photosynthesis.
  • Produce oxygen.
  • Form the base of aquatic food chains.

Many fish and other marine animals depend on microscopic algae for food.


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Figure 4. Photosynthetic protists produce oxygen and support aquatic ecosystems.


Harmful Protists

Some protists cause disease.

Examples include:

Plasmodium

  • Causes malaria.
  • Transmitted by mosquitoes.

Other Protists

Some infect:

  • Fish.
  • Livestock.
  • Plants.

These diseases can affect both ecosystems and agriculture.


Ecological Roles of Fungi

Fungi are among nature's most important decomposers.

They:

  • Break down dead organisms.
  • Recycle nutrients.
  • Improve soil fertility.
  • Support plant growth.

Some fungi also form symbiotic relationships with plant roots, helping plants absorb water and minerals.


Ecological Roles of Protists

Protists perform several important ecological functions.

Producers

Photosynthetic protists:

  • Produce oxygen.
  • Capture sunlight.
  • Support aquatic food webs.

Consumers

Some protists feed on bacteria and other microorganisms.

This helps control microbial populations.


Decomposers

Certain protists help recycle nutrients in aquatic environments.


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Figure 5. Fungi recycle nutrients, while many protists support aquatic ecosystems as producers and consumers.


Why Fungi and Protists Matter

Together, fungi and protists help:

  • Maintain ecosystems.
  • Recycle nutrients.
  • Produce food.
  • Manufacture medicines.
  • Support agriculture.
  • Sustain aquatic food chains.

Without them, ecosystems would function very differently.


Worked Example

Question

Match each organism to its description.

Organism Description
Yeast ?
Plasmodium ?
Penicillium ?
Microscopic algae.  ?

Solution

Organism Description
Yeast Used in bread making and fermentation
Plasmodium Causes malaria
Penicillium Produces the antibiotic penicillin
Microscopic algae.   Carry out photosynthesis and produce oxygen

Real-World Connection

Every loaf of bread owes its rise to yeast, a single-celled fungus. As yeast feeds on sugars in the dough, it produces carbon dioxide gas, causing the dough to expand. At the same time, microscopic algae in oceans and lakes produce a significant proportion of the oxygen in Earth's atmosphere, supporting life across the planet.


Did You Know?

Scientists estimate that phytoplankton—tiny photosynthetic protists found in oceans—produce around half of the Earth's oxygen. This means that roughly one out of every two breaths you take is possible because of these microscopic organisms.


Key Terms

Chitin – A strong carbohydrate that forms the cell walls of fungi.

Decomposer – An organism that breaks down dead organic matter and recycles nutrients.

Eukaryote – An organism whose cells contain a nucleus and membrane-bound organelles.

Fungi – A kingdom of organisms that absorb nutrients from organic matter and include yeasts, moulds, and mushrooms.

Hypha (plural: hyphae) – A thread-like filament that makes up the body of many fungi.

Mycelium – A network of hyphae that forms the main body of a fungus.

Protist – A diverse group of mostly single-celled eukaryotic organisms that do not belong to the plant, animal, or fungal kingdoms.

Spore – A reproductive cell that can develop into a new organism without fertilisation.


Key Takeaways

  • Fungi are eukaryotic organisms that absorb nutrients from organic matter and often reproduce using spores.
  • Protists are a diverse group of mostly single-celled eukaryotes that may carry out photosynthesis, consume other organisms, or absorb nutrients.
  • Fungi and protists differ from bacteria (prokaryotes) and viruses (non-cellular infectious particles).
  • Beneficial fungi are used in food production, medicine, and decomposition, while some fungi cause disease and food spoilage.
  • Beneficial protists, such as microscopic algae, produce oxygen and support aquatic food webs, while harmful protists such as Plasmodium cause diseases like malaria.
  • Fungi and protists play vital ecological roles by recycling nutrients, supporting food chains, and helping maintain healthy ecosystems.

5. Beneficial Microorganisms

Learning outcomes
  • I can identify beneficial uses of microorganisms.
  • I can explain how microorganisms contribute to nutrient cycling.
  • I can describe the role of microbes in food production.
  • I can explain how microorganisms benefit human health.
  • I can evaluate the importance of microorganisms in ecosystems and society.

Introduction

When people hear the word microorganism, they often think of germs and disease. However, the vast majority of microorganisms are beneficial. In fact, life on Earth would not be possible without them.

Beneficial microorganisms recycle nutrients, produce oxygen, help digest our food, manufacture medicines, and are used to produce many of the foods we eat every day. From the bacteria living in your digestive system to the yeast that makes bread rise, microorganisms quietly perform essential jobs that support ecosystems, agriculture, industry, and human health.


What Are Beneficial Microorganisms?

Beneficial microorganisms are microbes that provide useful services to living organisms or the environment.

These microorganisms include:

  • Bacteria.
  • Fungi.
  • Some protists.
  • Certain microscopic algae.

They help maintain healthy ecosystems and improve human life in many different ways.


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Figure 1. Beneficial microorganisms include bacteria, fungi, and photosynthetic protists.


Nutrient Cycling

One of the most important roles of microorganisms is nutrient cycling.

When plants and animals die, bacteria and fungi act as decomposers.

They break down dead organic matter into simpler substances.

This process:

  • Returns nutrients to the soil.
  • Makes minerals available for plants.
  • Prevents dead organisms from accumulating.

Without decomposers, ecosystems would soon run out of usable nutrients.


The Carbon Cycle

Microorganisms help recycle carbon.

They:

  • Break down dead organisms.
  • Release carbon dioxide during respiration.
  • Return carbon compounds to the environment.

Plants then use carbon dioxide during photosynthesis, continuing the carbon cycle.


The Nitrogen Cycle

Nitrogen is essential for making proteins and DNA.

Some bacteria perform nitrogen fixation, converting nitrogen gas from the atmosphere into forms plants can absorb.

Other bacteria recycle nitrogen from dead organisms back into the soil.

Without these bacteria, plants could not obtain enough nitrogen for healthy growth.


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Figure 2. Microorganisms play essential roles in nutrient cycling, especially the carbon and nitrogen cycles.


Food Production

Microorganisms are widely used to make foods and drinks.

Bacteria

Beneficial bacteria are used to produce:

  • Yoghurt.
  • Cheese.
  • Some fermented vegetables.

These bacteria convert sugars into lactic acid, which gives foods their characteristic flavour and texture.


Yeast

Yeast is a single-celled fungus.

It is used to make:

  • Bread.
  • Beer.
  • Wine.

During fermentation, yeast converts sugars into:

  • Carbon dioxide.
  • Ethanol.

The carbon dioxide causes bread dough to rise.


Moulds

Certain fungi are used to produce speciality cheeses such as:

  • Blue cheese.
  • Camembert.
  • Brie.

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Figure 3. Microorganisms are used to produce many everyday foods through fermentation.


Microorganisms and Human Health

The human body contains trillions of beneficial microorganisms.

Many live in the digestive system.

These microorganisms:

  • Help digest food.
  • Produce vitamins such as vitamin K and some B vitamins.
  • Prevent harmful microbes from multiplying.
  • Support the immune system.

Together they form the human microbiome.

A healthy microbiome contributes to overall health.


Probiotics

Some foods contain probiotic bacteria.

Examples include:

  • Live yoghurt.
  • Kefir.
  • Fermented milk products.

These beneficial bacteria can help restore the balance of microorganisms in the digestive system, particularly after antibiotic treatment.


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Figure 4. Beneficial bacteria in the human microbiome support digestion and help protect against disease.


Medicine

Microorganisms have transformed modern medicine.

Examples include:

Antibiotics

The fungus Penicillium produces penicillin, the first widely used antibiotic.


Vaccines

Some microorganisms are used in the production of vaccines.


Biotechnology

Genetically modified bacteria produce important medicines such as:

  • Human insulin.
  • Growth hormone.
  • Certain vaccines.

These products have improved the treatment of many diseases.


Agriculture

Beneficial microorganisms help farmers by:

  • Improving soil fertility.
  • Recycling nutrients.
  • Fixing nitrogen.
  • Breaking down organic matter.
  • Protecting crops from certain pests and diseases.

Healthy soil depends on diverse microbial communities.


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Figure 5. Beneficial microorganisms improve soil fertility and support healthy plant growth.


Environmental Applications

Microorganisms also help protect the environment.

They are used in:

Wastewater Treatment

Bacteria break down waste materials in sewage treatment plants.


Bioremediation

Certain microorganisms break down pollutants such as:

  • Oil spills.
  • Toxic chemicals.
  • Industrial waste.

This helps clean contaminated environments naturally.


Why Beneficial Microorganisms Are Important

Beneficial microorganisms support nearly every ecosystem.

They help:

  • Recycle nutrients.
  • Produce oxygen.
  • Maintain soil fertility.
  • Support food production.
  • Manufacture medicines.
  • Promote human health.
  • Clean the environment.

Without microorganisms, ecosystems would collapse and many human industries would not exist.


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Figure 6. Beneficial microorganisms play vital roles in ecosystems, industry, medicine, and everyday life.


Worked Example

Question

Match each beneficial use to the correct microorganism.

Use Microorganism
Bread making ?
Nitrogen fixation ?
Yoghurt production ?
Penicillin production.  ?

 

Solution

Use Microorganism
Bread making Yeast (fungus)
Nitrogen fixation Nitrogen-fixing bacteria
Yoghurt production Lactic acid bacteria
Penicillin production.   Penicillium (fungus)

Real-World Connection

Every day, billions of beneficial microorganisms work inside your digestive system. They help break down food, produce essential vitamins, support your immune system, and compete with harmful microbes. At the same time, farmers rely on soil microorganisms to maintain fertile land, while industries use microbes to produce foods, medicines, and environmentally friendly products.


Did You Know?

Scientists estimate that the microorganisms living in and on the human body contain millions more genes than the human genome itself. These microbial genes help digest food, produce important nutrients, and influence many aspects of human health, making the human microbiome an active partner in keeping us healthy.


Key Terms

Beneficial microorganism – A microorganism that provides useful services to organisms or ecosystems.

Bioremediation – The use of microorganisms to break down pollutants and clean contaminated environments.

Decomposer – An organism that breaks down dead organic matter and recycles nutrients.

Fermentation – A process in which microorganisms convert sugars into products such as carbon dioxide, ethanol, or lactic acid.

Human microbiome – The community of microorganisms living on and inside the human body.

Nitrogen fixation – The process by which certain bacteria convert atmospheric nitrogen into forms that plants can use.

Probiotic – A beneficial microorganism that can help maintain a healthy balance in the digestive system.


Key Takeaways

  • Most microorganisms are beneficial and are essential for life on Earth.
  • Bacteria and fungi recycle nutrients through decomposition, supporting the carbon and nitrogen cycles.
  • Microorganisms are used in food production, including bread, yoghurt, cheese, and fermented beverages.
  • Beneficial microbes in the human microbiome support digestion, produce vitamins, and help protect against disease.
  • Microorganisms are widely used in medicine, agriculture, industry, and environmental protection.
  • The contributions of beneficial microorganisms are essential for healthy ecosystems, sustainable agriculture, modern medicine, and human society.